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Dennis Clegg

Professor

Contact Information

Phone: (805) 893-8490
Email: dennis.clegg@lifesci.ucsb.edu
Office: 5125 Bio II
Website: Clegg Lab

Address

Molecular, Cellular, and Developmental Biology
University of California, Santa Barbara
Santa Barbara, CA 93106-9625

Bio

Dr. Clegg earned his BS degree in biochemistry at UC Davis and his PhD in biochemistry at UC Berkeley, where he used emerging methods in recombinant DNA to study the sensory transduction systems of bacteria. As a Jane Coffin Childs Postdoctoral Scholar at UCSF, he studied neural development and regeneration. He has continued this avenue of research since joining the UCSB faculty, with studies of extracellular matrix and integrin function in the developing eye. His current emphasis is in stem cell research, with a focus on developing therapies for ocular disease. Dr. Clegg is the recipient of the UCSB Distinguished Teaching Award in the Physical Sciences, the UCSB Community Affairs Board Award, the National Eye Institute Audacious Goals award, and served as Chair of the Department of Molecular, Cellular and Developmental Biology from 2004-2009. He has been a Frontiers of Vision Research Lecturer at the National Eye Institute, a Keynote Lecturer at the Stem Cells World Congress, and a TEDx speaker. He is founder and Co-Director of the UCSB Center for Stem Cell Biology and Engineering, and serves on advisory boards for the California Institute for Regenerative Medicine and the National Institutes of Health Center for Regenerative Medicine. He is a Co-Principal Investigator of The California Project to Cure Blindness, a multi-disciplinary effort to develop a stem cell therapy for Age-Related Macular Degeneration.

Research

How does something as complex, beautiful, and functional as an eye develop? How do neurons become precisely aligned and connected in intricate networks that allow vision and thought? And what goes awry in the case of neurodegenerative diseases? Finally, can stem cells be applied in novel therapies to treat such diseases, especially age-related macular degeneration? These are the principal questions that drive our current efforts in human stem cell research, as part of the UCSB Center for Stem Cell Biology and Engineering.

Derivation of Ocular Cells from Stem Cells

Embryonic, induced pluripotent (iPS), and adult stem cells have great potential for treating a variety of diseases, including eye maladies such as macular degeneration. We have begun studies aimed at understanding the basic biology of how stem cells differentiate into ocular cells, especially retinal pigmented epithelium (RPE). The RPE forms a pigmented monolayer behind the retina, and functions to nourish rod and cone photoreceptors. RPE are of particular interest because their death leads to blindness. Loss of RPE is thought to be the first event in age-related macular degeneration, the leading cause of blindness in the elderly. There is great interest in using stem cell-derived RPE to treat this and other ocular diseases. We have recently shown for the first time that RPE differentiated from iPS cells can rescue vision in a rat model of retinal dystrophy. Futhermore, we found that RPE could be reprogrammed to iPS cells, and that some lines retained a memory of their origin and tended to spontaneously redifferentiate into RPE. We are currently investigating the molecular basis of this example of epigenetic memory.

While there are many significant challenges to overcome in developing stem cell-based therapies, the eye has certain advantages. Ocular tissues are well understood, easily accessible, and can be imaged noninvasively. Furthermore, relatively few transplanted cells are likely to be needed compared to other sites in the body. Finally, there are many excellent ophthalmological tests that are available to assess outcomes. With funding from the California Institute for Regenerative Medicine, we are working with a "Disease Team" of investigators from USC, Caltech, City of Hope, University College, London, and Geron, Inc, ranging from basic to clinical, to develop a stem cell-based therapy for Age-Related Macular Degeneration. We have developed protocols to generate very pure cultures of RPE, which we have analyzed using a broad arsenal of molecular and cellular assays. Working with other team members, we have devised a synthetic scaffold to support these cells after transplant. Our goal is to develop a combination of cells and scaffold that can be implanted in patients in a simple, outpatient procedure.

Soft Tissue Regeneration

Many diseases and injuries involve loss of soft tissue, and current methods of fat grafting are often not adequate. The richest source of adult stem cells is adipose tissue, and we are investigating adult human adipose stem cells, which might have applications in soft tissue regeneration. We are engaged in interdisciplinary collaborations with materials scientists to engineer synthetic matrix for stem cell growth and differentiation. Novel, bio-mimetic substrates are being designed to stimulate stem cell integrin receptors that signal to bring about cell survival, proliferation, and/or differentiation.

Selected Publications

  • Buchholz, D.B., Pennington, B.O., Croze, R.H., Hinman, C.R., Coffey, P.J., Clegg, D.O. (2013) Rapid and efficient directed differentiation of human pluripotent stem cells into retinal pigmented epithelium. Stem Cells Translational Medicine. Epub.
  • Clegg, D.O., Hikita, S.T., Hu, Q., Buchholz, D.E., Rowland, T.J., Conti, L., Pennington, B., Croze, R., Leach, L., Tsie, M., and Johnson, L.V. (2013) “Derivation of retinal pigmented epithelial cells from pluripotent stem cells”, in The Stem Cell Handbook, Second Edition, S. Sell, Ed., Springer Publishing, (in press).
  • Hu, Y., Liu, L., Zhu, D., Ribeiro, R., Diniz, B., Thomas, P.B., Ahuja, A.K., Hinton, D.R., Tai, Y.C., Hikita, S.T., Johnson, L.V., Clegg, D.O., Thomas, B.B., Humayun, M. (2012) A Novel Approach for Sub-retinal Implantation of Ultrathin Substrates Containing Stem Cell Derived RPE Monolayer. Ophthalmic Research, 48:186-191.
  • Rowland, T.J., Blaschke A.J., Buchholz, D.E., Hikita, S.T., Johnson, L.V. and Clegg, D.O. (2012) Differentiation of human pluripotent stem cells to retinal pigmented epithelium in defined conditions using purified extracellular matrix proteins. J. Tissue Eng Regen Med. Epub
  • Rowland, T. R., Buchholz, D.E, Clegg, D.O. (2011) Pluripotent human stem cells for the treatment of retinal disease. J. Cell Physiol., Epub.
  • Neveu P, Kye MJ, Qi S, Buchholz DE, Clegg DO, Sahin M, Park IH, Kim KS, Daley GQ, Kornblum HI, Shraiman BI, Kosik KS (2010). MicroRNA profiling reveals two distinct p53-related human pluripotent stem cell states. Cell Stem Cell. 7:671-81.
  • Hu, Q., Friedrich, A., Johnson, L.V., and Clegg, D.O. (2010) Memory in induced pluripotent stem cells: Reprogrammed human retinal pigmented epithelial cells show tendency for spontaneous redifferentiation. Stem Cells, 28:1981-91.
  • Kolhar, P., Kotamraju, V. R., Hikita, S. T., Clegg, D.O., and Ruoslahti, E. (2010). Synthetic surfaces for human embryonic stem cell culture. J Biotechnol. 146:143-146.
  • Gupta, N., Lin, B. F., Campos, L. M., Dimitriou, M. D., Hikita, S. T., Treat, N. D., Tirrell, M. V., Clegg, D. O., Kramer, E. J., and Hawker, C. J. (2010). A versatile approach to high-throughput microarrays using thiol-ene chemistry. Nat Chem 2, 138-145.
  • Rowland TJ, Miller LM, Blaschke AJ, Doss EL, Bonham AJ, Hikita ST, Johnson LV, Clegg DO (2010). Roles of Integrins in Human Induced Pluripotent Stem Cell Growth on Matrigel and Vitronectin. Stem Cells Dev. 19:1231-40.
  • Carr AJ, Vugler AA, Hikita ST, Lawrence JM, Gias C, Chen LL, Buchholz DE, Ahmado A, Semo M, Smart MJ, Hasan S, da Cruz L, Johnson LV, Clegg DO, Coffey PJ. (2009) Protective Effects of Human iPS-Derived Retinal Pigment Epithelium Cell Transplantation in the Retinal Dystrophic Rat. PLoS ONE. 4:e8152.
  • Buchholz DE, Hikita ST, Rowland TJ, Friedrich AM, Hinman CR, Johnson LV, Clegg DO (2009) . Derivation of functional retinal pigmented epithelium from induced pluripotent stem cells. Stem Cells. 27:2427-2434.
  • Clegg, D.O., Buchholz, D., Hikita, S.T., Rowland, T., Hu, Q., Johnson, L.V. (2008) Retinal Pigment Epithelial Cells: Development in vivo and Derivation from Human Embryonic Stem Cells in vitro for treatment of Age-Related Macular Degeneration in Clegg, D.O., and Shi, Y. (2008) editors, "Stem Cell Research and Therapeutics", Springer, Rotterdam, Nr.
  • Hikita S.T., Kosik K.S., Clegg D.O., and Bamdad C. (2008). MUC1* mediates the growth of human pluripotent stem cells. PLoS ONE, 3:e3312.
  • Dunkle, E.C., Zaucke, F. and Clegg, D.O. (2007) Thrombospondin-4 and matrix 3-dimensionality in axon outgrowth and adhesion in the developing retina. Exp. Eye Res. 84:707-717.
PubMed Database

MCDB Research Areas

  • Biomedical Sciences
  • Cell Biology
  • Developmental & Stem Cell Biology
  • Neuroscience

Campus Affiliations

  • Center for Stem Cell Biology and Engineering
  • Center for Bioengineering
  • Center for Nanomedicine

Off-campus Affiliations

  • Stem cell based treatment strategy for Age-related Macular Degeneration (AMD)
  • Macular Degeneration: Progress and Promise in Stem Cell Research Video

Awards / Honors

  • University of California Regents' Scholarship
  • Jane Coffin Childs Memorial Fund For Medical Research Postdoctoral Scholarship
  • University of California Regents' Junior Faculty Fellowship
  • UCSB Distinguished Teaching Award
  • UCSB Community Affairs Board Award
  • Frontiers of Vision Research Lecturer, National Eye Institute
  • Keynote Lecturer, Stem Cells World Congress
  • TedX Speaker
  • National Eye Institute Audacious Goals Award

Molecular, Cellular, and Developmental Biology • University of California, Santa Barbara
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